BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB030C01SP1|AL429179
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig730 1214 0.0
>3x_Contig730
Length = 2506
Score = 1214 bits (611), Expect = 0.0
Identities = 620/623 (99%), Gaps = 1/623 (0%)
Strand = Plus / Plus
Query: 337 aagcctaaccctccacctggtttctctgatgtcatattaactccaaagggatccactcct 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcctaaccctccacctggtttctctgatgtcatattaactccaaagggatccactcct 60
Query: 397 gagcctgtagcatcacctccagtacccatagatactgccgaatcatctgcaaagaaatca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagcctgtagcatcacctccagtacccatagatactgccgaatcatctgcaaagaaatca 120
Query: 457 aaacctcatgttccttcaaagaaacctgaactagcaatgtccctggattcttggaaacca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacctcatgttccttcaaagaaacctgaactagcaatgtccctggattcttggaaacca 180
Query: 517 cttcaaccaaaatagttcaccccaacgacgccctctcttcttcaatactatcataaaagt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcaaccaaaatagttcaccccaacgacgccctctcttcttcaatactatcataaaagt 240
Query: 577 tataaatatacaactaatttatgtacataataaaaaacttagaaacatcacatttatggc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tataaatatacaactaatttatgtacataataaaaaacttagaaacatcacatttatggc 300
Query: 637 gattgacctcctactgatattctacttgtaggactgcggtactgtcatataatatcttcg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattgacctcctactgatattctacttgtaggactgcggtactgtcatataatatcttcg 360
Query: 697 tttttgtttattcaacatccaccgatcatgttgacatgaaaaattcaaggctttcccatt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttttgtttattcaacatccaccgatcatgttgacatgaaaaattcaaggctttcccatt 420
Query: 757 taatatatatttgadaaatctgtggagagtggtactatttgaacttatcaactgaatata 816
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taatatatatttgaaaaatctgtggagagtggtactatttgaacttatcaactgaatata 480
Query: 817 ggtgacgtagccatcaaccacatgccaatcggacatgcttcactgaacatagcaaccaag 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtgacgtagccatcaaccacatgccaatcggacatgcttcactgaacatagcaaccaag 540
Query: 877 agagcgtatattcagttgccatctcctccaccagagccagttaaaagagtwaaatacg-a 935
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 541 agagcgtatattcagttgccatctcctccaccagagccagttaaaagagtaaaatacgaa 600
Query: 936 gataatgtgctgtttgaaattaa 958
|||||||||||||||||||||||
Sbjct: 601 gataatgtgctgtttgaaattaa 623
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6748
Number of Sequences: 1807
Number of extensions: 6748
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)